PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017586.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SRS
Protein Properties Length: 322aa    MW: 33776.6 Da    PI: 7.8522
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017586.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702173.51e-531242643153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                   g++sC+dCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaa+rrerq++++++++++ a   + + + ++           + +   +      
  Aco017586.1 124 GGGMSCRDCGNQAKKDCVHLRCRTCCKSRGFHCPTHVKSTWVPAARRRERQHNQQQQQQQQFAGGGSGRGEPSK----------RARE--VGG--PRE 207
                  5789**********************************************888777655554332222211111..........1111..122..234 PP

       DUF702 101 etsslPeevsseavfrcvrvssvddg....eeelaYqtavsigGhvfkGiLydqGle 153
                  e++++P+evsseavfrcvrv+ v+d+    +ee+aY tavsigGhvfkGiL+++G++
  Aco017586.1 208 EVARFPAEVSSEAVFRCVRVGPVEDEgravDEEYAYSTAVSIGGHVFKGILHHYGPD 264
                  6788********************954455789**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.2E-57126264IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-27128170IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-21211263IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGFSLGGGR TGHNQNRDHN QQQQQQQQQQ QHQQQHPINI NPTADSLFLY GYSSSSVGGG  60
GGGGSGFQLW HQEGDFYSSR GGTGTGSGSG GGGGGAARII SFSDDHAAEG VGIMRGGSGG  120
SSGGGGMSCR DCGNQAKKDC VHLRCRTCCK SRGFHCPTHV KSTWVPAARR RERQHNQQQQ  180
QQQQFAGGGS GRGEPSKRAR EVGGPREEVA RFPAEVSSEA VFRCVRVGPV EDEGRAVDEE  240
YAYSTAVSIG GHVFKGILHH YGPDPNSSTS SDYHLLREGS PPTSAVGGDA SGAAVMIDPY  300
PTPLSGFLSG AQYYPHHTTS Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400794.14e-65PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_009400795.14e-65PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9XGX05e-54SHI_ARATH; Protein SHORT INTERNODES
TrEMBLM0S7C24e-62M0S7C2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P12310_0011e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-43Lateral root primordium (LRP) protein-related